About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5804632_5806067_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5804632 - 5806067
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
CTTCCATCAAGT
Flanking Amino Acid:
KREAFLPFSTGRRNCIGESL
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
79.3
31.1
Major BPS
75
0.62
1
65.3
41.5
Major PPT
86.3
0.82
0.7
81
24.1
Minor 5ss
35.1
-1.7
2.7
41.8
44.8
Minor BPS
48.1
-0
2.1
71.07
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012253
5804441 - 5814082
9642