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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5806210_5806728_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5806210 - 5806728
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTACTTACAA
Flanking Amino Acid:
THFRGYFLPKGIIVIPSLTS
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.2
0.88
0.7
81.5
35.8
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
61.3
0.35
1.9
77.86
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012253
5804441 - 5814082
9642