Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5807408_5808407_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5807408 - 5808407

Intron Length:

1000

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TGTGTCTCTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAG

U12 Branch Point Sequence:

GCTTTCTTACCG

Flanking Amino Acid:

TDALIFKQHEEKNKKDSIFH

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

36.6

Major BPS

75.6

0.64

1.5

34.5

Major PPT

67.7

0.4

1.1

64.7

41.7

Minor 5ss

40.6

-1

2.8

52.4

44.8

Minor BPS

60.4

0.19

1.7

63.23

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011773

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012253

5804441 - 5814082

9642