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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5809526_5809621_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5809526 - 5809621
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAC
U12 Branch Point Sequence:
ATCACACCAACA
Flanking Amino Acid:
FLIEMIKSFKGEPFSLRSFN
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
59
0.22
1
66.7
30
Major PPT
76.3
0.59
0.8
69.4
29.6
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
43.7
-0.4
2.1
57.35
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012253
5804441 - 5814082
9642