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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5809772_5811628_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5809772 - 5811628
Intron Length:
1857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACTAGAG
5'SS Class:
major
3'SS Sequence:
ATGCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
GATGTCTCATGC
Flanking Amino Acid:
PIFDQIQNGNGVFFSIGELW
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.1
50.3
40.7
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
65.5
0.35
0.9
55.3
35.7
Minor 5ss
29.3
-2.4
3.5
38.4
46.6
Minor BPS
41
-0.7
2
47.86
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012253
5804441 - 5814082
9642