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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5811792_5813884_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5811792 - 5813884
Intron Length:
2093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
TCTTCGCTGACT
Flanking Amino Acid:
IRRQDKSLMKLAEEYGPVFT
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
39.3
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
79.8
0.67
0.8
76.4
32.2
Minor 5ss
29.9
-2.3
3.3
38.1
46.8
Minor BPS
52.7
0.16
2.4
79.95
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011773
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012253
5804441 - 5814082
9642