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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5822318_5823136_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5822318 - 5823136
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TGCCAATTAACA
Flanking Amino Acid:
TKLLGSPMVLLYNFYPSLGF
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
72.2
37.2
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
75.7
0.58
0.9
69
37.2
Minor 5ss
32
-2.1
3.6
44.7
44.3
Minor BPS
51.9
0.06
1.8
64.35
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010224
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028148
5819507 - 5826274
6768