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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5822336_5823142_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5822336 - 5823142
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCTGGTA
5'SS Class:
weak_major
3'SS Sequence:
TGCCAATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TGCCAATTAACA
Flanking Amino Acid:
ENTKLLGSPMTSVAPQLYNF
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.1
54.9
37.9
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
64.7
0.33
1
58.3
40.8
Minor 5ss
26.5
-2.7
3.7
34.5
43.8
Minor BPS
51.9
0.06
1.8
64.35
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010224
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010742
5819507 - 5826274
6768