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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5823691_5823739_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5823691 - 5823739
Intron Length:
49

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTTAAATAT
5'SS Class:
weak_major
3'SS Sequence:
GAATTTCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTATCAAGAATT
Flanking Amino Acid:
VRILEELNSLKQNTWKPFDT
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1.2
57.8
35.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.7
0.42
1
59.4
45.9
Minor 5ss
37.9
-1.4
3.2
54.6
43.7
Minor BPS
47.7
-0.1
1.9
69.5
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010224
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028148
5819507 - 5826274
6768