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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5824225_5826085_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5824225 - 5826085
Intron Length:
1861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCTCGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTCACCT
Flanking Amino Acid:
LKKPFQSLTELSKTYGNVFT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
70.4
42.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.6
0.46
1
69.7
36.6
Minor 5ss
37.1
-1.5
3.6
55.4
48.8
Minor BPS
50.1
0.08
2
75.58
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010224
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028148
5819507 - 5826274
6768
ENSAPLT00000010742
5819507 - 5826274
6768