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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5832853_5833488_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5832853 - 5833488
Intron Length:
636

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
SMAYLQCRMERQLMANEPLE
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.4
1.17
0.7
94.3
13.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
72.4
0.5
0.9
71.9
37.6
Minor 5ss
26.7
-2.7
3.6
37.4
40
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
COX19
Ensembl Gene ID:
ENSAPLG00000020331
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036388
5832510 - 5833576
1067