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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5847166_5857048_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5847166 - 5857048
Intron Length:
9883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAGAC
U12 Branch Point Sequence:
CCAAGTGCAATT
Flanking Amino Acid:
NAACADCTAPDPDWASHSLG
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.1
38.4
Major BPS
52.7
0.07
1
50.4
34.3
Major PPT
88.1
0.86
0.7
85.4
29.3
Minor 5ss
30
-2.3
3.5
39.6
45.9
Minor BPS
35
-1
2.2
44.63
41

Associated Gene:

Gene:
ADAP1
Ensembl Gene ID:
ENSAPLG00000009732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010164
5847081 - 5902659
55579