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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5857180_5858961_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5857180 - 5858961
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
LDDWDDAQVEFMAANGNNVA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
39.1
-1.2
3
49.9
46.5
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
ADAP1
Ensembl Gene ID:
ENSAPLG00000009732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010164
5847081 - 5902659
55579