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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5859054_5868560_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5859054 - 5868560
Intron Length:
9507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTCTAC
U12 Branch Point Sequence:
CCCTGTCTACTT
Flanking Amino Acid:
FYYKPTFLDCQLLREQWIRA
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
49.5
-0
1.4
50.2
44.9
Major PPT
94.1
0.99
0.6
87.9
29.5
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
39.4
-0.7
2.1
50.83
44.6

Associated Gene:

Gene:
ADAP1
Ensembl Gene ID:
ENSAPLG00000009732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010164
5847081 - 5902659
55579