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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5892953_5895545_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5892953 - 5895545
Intron Length:
2593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
CTGTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTGCTCACTC
Flanking Amino Acid:
GALKYFNKNDAKEPKAIMKI
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
78.3
32.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
82.9
0.74
0.9
80.3
37.3
Minor 5ss
40.7
-1
2.9
51.8
38.6
Minor BPS
47
-0.2
2.2
63.09
42.8

Associated Gene:

Gene:
ADAP1
Ensembl Gene ID:
ENSAPLG00000009732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010164
5847081 - 5902659
55579