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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5895693_5899928_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5895693 - 5899928
Intron Length:
4236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTGCAT
U12 Branch Point Sequence:
TTCTTGTTATTA
Flanking Amino Acid:
NIFVYHEDGKEIVDWFNAIR
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
53.6
0.09
1.4
65.3
41.5
Major PPT
77.2
0.61
0.9
78
35.2
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
48.8
-0
2.2
65.92
41.6

Associated Gene:

Gene:
ADAP1
Ensembl Gene ID:
ENSAPLG00000009732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010164
5847081 - 5902659
55579