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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5900549_5900944_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5900549 - 5900944
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGACTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CACTTCTTGACT
Flanking Amino Acid:
EGYMEKTGPKQTEGFKKRWF
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.6
36.7
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
76
0.59
0.9
66
40.5
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
68.9
0.68
1.3
75.14
42

Associated Gene:

Gene:
ADAP1
Ensembl Gene ID:
ENSAPLG00000009732
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010164
5847081 - 5902659
55579