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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5906652_5907282_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5906652 - 5907282
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATTC
Flanking Amino Acid:
KQTSSYGGLLGNLLNSLMGT
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82
0.72
0.8
74.9
39.5
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
52.7
0.07
1.6
62.95
37

Associated Gene:

Gene:
GET4
Ensembl Gene ID:
ENSAPLG00000009577
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009999
5906563 - 5916788
10226