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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5907356_5907768_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5907356 - 5907768
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAT
U12 Branch Point Sequence:
TTGTTCTCCACC
Flanking Amino Acid:
SLKRDPMYNEYLDRIGQLFF
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
67.1
0.42
1.4
71.4
45.1
Major PPT
78.3
0.64
0.9
74.5
40
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
53.9
0.1
2
69.88
41.9

Associated Gene:

Gene:
GET4
Ensembl Gene ID:
ENSAPLG00000009577
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009999
5906563 - 5916788
10226