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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5908069_5909941_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5908069 - 5909941
Intron Length:
1873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
VDMFVAQAVLQFLCLKNKTS
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
70.3
40.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
92.2
0.95
0.6
88.1
21.7
Minor 5ss
39.4
-1.2
3.7
62.7
43.1
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
GET4
Ensembl Gene ID:
ENSAPLG00000009577
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009999
5906563 - 5916788
10226