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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5911901_5912861_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5911901 - 5912861
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATGCTAAATA
Flanking Amino Acid:
SDAKVTDDLLENLAKLFSLM
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.2
0.63
0.9
70.3
41
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
51.3
0.04
2.1
65.15
41.5

Associated Gene:

Gene:
GET4
Ensembl Gene ID:
ENSAPLG00000009577
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009999
5906563 - 5916788
10226