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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5912944_5913369_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5912944 - 5913369
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTACTA
Flanking Amino Acid:
GALLFFSHNQQNSAADLSML
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
78.6
0.64
0.8
73.6
36
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
59.4
0.29
1.9
73.34
38.5

Associated Gene:

Gene:
GET4
Ensembl Gene ID:
ENSAPLG00000009577
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009999
5906563 - 5916788
10226