About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5918784_5919202_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5918784 - 5919202
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TTTTCCTTCTCT
Flanking Amino Acid:
GEPLQMFPVMENSNNVFQIV
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
84.3
0.77
0.7
77.7
31.1
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
50.3
0.09
3.6
91.83
37.8

Associated Gene:

Gene:
SUN1
Ensembl Gene ID:
ENSAPLG00000008834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032287
5918670 - 5939572
20903
ENSAPLT00000009252
5918670 - 5939572
20903
ENSAPLT00000042907
5918670 - 5945358
26689
ENSAPLT00000041741
5918481 - 5945358
26878
ENSAPLT00000034955
5918670 - 5939572
20903