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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5922418_5923320_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5922418 - 5923320
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGGCTTCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTCTTGTTAATG
Flanking Amino Acid:
CEKIDVIHEKVDAQVKESVR
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
66.1
0.36
1
59.5
41.7
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
50.2
-0.1
2.1
57.74
45

Associated Gene:

Gene:
SUN1
Ensembl Gene ID:
ENSAPLG00000008834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034955
5918670 - 5939572
20903
ENSAPLT00000032287
5918670 - 5939572
20903
ENSAPLT00000009252
5918670 - 5939572
20903
ENSAPLT00000042907
5918670 - 5945358
26689
ENSAPLT00000041741
5918481 - 5945358
26878