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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5924481_5924847_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5924481 - 5924847
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGAAA
5'SS Class:
major
3'SS Sequence:
GTATTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTAAACTTAACG
Flanking Amino Acid:
LLKKLSAESKDIQKEFDIAK
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.4
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.8
0.6
0.9
74.9
39.6
Minor 5ss
37.7
-1.4
3.1
48.2
47.6
Minor BPS
66.6
0.38
1.6
70.66
41.6

Associated Gene:

Gene:
SUN1
Ensembl Gene ID:
ENSAPLG00000008834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034955
5918670 - 5939572
20903
ENSAPLT00000032287
5918670 - 5939572
20903
ENSAPLT00000009252
5918670 - 5939572
20903
ENSAPLT00000042907
5918670 - 5945358
26689
ENSAPLT00000041741
5918481 - 5945358
26878