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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5925660_5925801_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5925660 - 5925801
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTACACCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATATATTAAAA
Flanking Amino Acid:
GSSHTVQPTKDTINIFDSGR
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
70
0.45
0.8
67.4
33.4
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
55.1
0.16
1.7
68
37.3

Associated Gene:

Gene:
SUN1
Ensembl Gene ID:
ENSAPLG00000008834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034955
5918670 - 5939572
20903
ENSAPLT00000032287
5918670 - 5939572
20903
ENSAPLT00000009252
5918670 - 5939572
20903
ENSAPLT00000042907
5918670 - 5945358
26689
ENSAPLT00000041741
5918481 - 5945358
26878