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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5927150_5927241_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5927150 - 5927241
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TACATAATAAAT
Flanking Amino Acid:
LSLLKVFLLRRCLPKIFKLL
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
77.7
0.62
0.8
70
36.5
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
44.2
-0.3
1.9
61.4
41.5

Associated Gene:

Gene:
SUN1
Ensembl Gene ID:
ENSAPLG00000008834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009252
5918670 - 5939572
20903
ENSAPLT00000042907
5918670 - 5945358
26689
ENSAPLT00000041741
5918481 - 5945358
26878
ENSAPLT00000034955
5918670 - 5939572
20903
ENSAPLT00000032287
5918670 - 5939572
20903