Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5931096_5932318_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5931096 - 5932318

Intron Length:

1223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGTAAC

5'SS Class:

major

3'SS Sequence:

TTTTTTTTAATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCACAC

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

SRDRSQKHPSRGMYFFMSKI

Intron Amino Acid Position:

231

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

76.9

31.6

Major BPS

67.8

0.44

30.1

Major PPT

86.6

0.82

0.7

85.3

27.9

Minor 5ss

37.9

-1.4

2.7

47.4

36.1

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

SUN1

Ensembl Gene ID:

ENSAPLG00000008834

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042907

5918670 - 5945358

26689

ENSAPLT00000041741

5918481 - 5945358

26878

ENSAPLT00000032287

5918670 - 5939572

20903