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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5933314_5933615_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5933314 - 5933615
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TGTCTCTTATCT
Flanking Amino Acid:
SGNVTFREQSKVVRQRKSTN
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
84.6
33.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
81
0.7
0.8
73.6
37
Minor 5ss
47
-0.3
2.9
67.1
37.8
Minor BPS
66.4
0.59
1.6
82.05
39.1

Associated Gene:

Gene:
SUN1
Ensembl Gene ID:
ENSAPLG00000008834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041741
5918481 - 5945358
26878
ENSAPLT00000034955
5918670 - 5939572
20903
ENSAPLT00000032287
5918670 - 5939572
20903
ENSAPLT00000009252
5918670 - 5939572
20903
ENSAPLT00000042907
5918670 - 5945358
26689