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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5939573_5944639_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5939573 - 5944639
Intron Length:
5067

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAGGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TCACCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTGCTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.98
0.9
72.3
38.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.4
0.71
0.8
75.5
32.7
Minor 5ss
22.8
-3.1
3.8
32.5
42.3
Minor BPS
61.2
0.43
1.7
77.64
39.7

Associated Gene:

Gene:
SUN1
Ensembl Gene ID:
ENSAPLG00000008834
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042907
5918670 - 5945358
26689
ENSAPLT00000041741
5918481 - 5945358
26878