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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_594913_595052_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
594913 - 595052
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCACCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTGTTTCACC
Flanking Amino Acid:
WLVLKNLTPQIDGSTLRTLC
Intron Amino Acid Position:
1711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
70.4
0.46
0.8
67.5
34.1
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
59
0.27
2.2
77.59
39

Associated Gene:

Gene:
TNRC6A
Ensembl Gene ID:
ENSAPLG00000009978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029030
594145 - 629519
35375
ENSAPLT00000010410
594145 - 629519
35375