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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5952560_5953037_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5952560 - 5953037
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTTTATAAACC
Flanking Amino Acid:
QDQDTQNAVLNALKEGSILY
Intron Amino Acid Position:
787

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.3
36.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
39.6
-1.2
3.3
57.8
40.6
Minor BPS
56.6
0.19
1.9
71.91
39

Associated Gene:

Gene:
DNAAF5
Ensembl Gene ID:
ENSAPLG00000008703
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009064
5952343 - 5980493
28151