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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5953230_5954938_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5953230 - 5954938
Intron Length:
1709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GGTTGTATATTT
Flanking Amino Acid:
DEDQLTKIYPEVLKRLDDAS
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.4
0.82
0.8
80.9
31
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
43.3
-0.4
2.1
62.05
42.3

Associated Gene:

Gene:
DNAAF5
Ensembl Gene ID:
ENSAPLG00000008703
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009064
5952343 - 5980493
28151