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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5955096_5956400_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5955096 - 5956400
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTTGTTAATT
Flanking Amino Acid:
IHCETLSPEETLKVKDVLMP
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.7
0.58
0.9
67.8
42.5
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
64.1
0.52
2
82.74
39.5

Associated Gene:

Gene:
DNAAF5
Ensembl Gene ID:
ENSAPLG00000008703
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009064
5952343 - 5980493
28151