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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5956552_5961283_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5956552 - 5961283
Intron Length:
4732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTCTTATTT
Flanking Amino Acid:
QKANETVNSQGLFPSYLEIV
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82
0.72
0.9
73.6
41.8
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
63.6
0.51
1.6
75.8
41.6

Associated Gene:

Gene:
DNAAF5
Ensembl Gene ID:
ENSAPLG00000008703
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009064
5952343 - 5980493
28151