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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5969271_5971444_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5969271 - 5971444
Intron Length:
2174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TATTAAAAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTTTATTAAAA
Flanking Amino Acid:
QAGVCQRSEEVFYMEQLLYC
Intron Amino Acid Position:
467

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
55.6
0.13
1.1
50.2
41.6
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
62.7
0.39
1.7
73.41
38.1

Associated Gene:

Gene:
DNAAF5
Ensembl Gene ID:
ENSAPLG00000008703
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009064
5952343 - 5980493
28151