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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_597095_597494_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
597095 - 597494
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCGCC
5'SS Class:
major
3'SS Sequence:
TCTCTATTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTTTTCTGAATC
Flanking Amino Acid:
NGSSSVNWPPEFRPGEPWKG
Intron Amino Acid Position:
1530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66.4
40.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.6
0.6
0.8
69.6
35.7
Minor 5ss
36.5
-1.5
3.5
51
45.8
Minor BPS
68.3
0.55
1.4
74.51
36.5

Associated Gene:

Gene:
TNRC6A
Ensembl Gene ID:
ENSAPLG00000009978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029030
594145 - 629519
35375
ENSAPLT00000010410
594145 - 629519
35375