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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5971658_5974148_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5971658 - 5974148
Intron Length:
2491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
GTTTTCAGAAAA
Flanking Amino Acid:
LDEESEVVRNCVKAAELIGT
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
89.4
0.89
0.7
88.1
28.8
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
49.9
-0
1.8
67.51
37.9

Associated Gene:

Gene:
DNAAF5
Ensembl Gene ID:
ENSAPLG00000008703
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009064
5952343 - 5980493
28151