Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5982861_5996612_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5982861 - 5996612

Intron Length:

13752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

AGCTGTTTCATT

Flanking Amino Acid:

LREHFEKLEKEECKQILARQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

1.2

76.2

39.9

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

89.9

0.9

0.7

84.7

30.1

Minor 5ss

29.8

-2.3

3.1

41.5

44.9

Minor BPS

45.9

-0.2

2.1

62.05

42.9

Associated Gene:

Gene:

PRKAR1B

Ensembl Gene ID:

ENSAPLG00000007819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008186

5982657 - 6080064

97408