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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_5996784_6000257_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5996784 - 6000257
Intron Length:
3474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAC
U12 Branch Point Sequence:
TTTTCTCCTACA
Flanking Amino Acid:
EEDAVSYVRKVIPKDYKTMT
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
63.6
0.34
1.2
55.4
41.7
Major PPT
90
0.9
0.6
84.8
23.1
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
49.1
-0
2.1
72.55
39

Associated Gene:

Gene:
PRKAR1B
Ensembl Gene ID:
ENSAPLG00000007819
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008186
5982657 - 6080064
97408