Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_603490_603932_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

603490 - 603932

Intron Length:

443

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTTTTTAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

TATATTATAACT

Flanking Amino Acid:

NQLSQISQLQGRSLSMQQQM

Intron Amino Acid Position:

1363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.3

0.95

0.8

80.2

30.6

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

81.4

0.71

86.9

31.1

Minor 5ss

43.2

-0.8

2.9

55.3

48.9

Minor BPS

60.4

0.4

1.6

78.58

37.2

Associated Gene:

Gene:

TNRC6A

Ensembl Gene ID:

ENSAPLG00000009978

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010410

594145 - 629519

35375