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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_603825_603932_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
603825 - 603932
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CACTGTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTAAAAAA
Flanking Amino Acid:
NQLSQISQLQRLLAQQQKAQ
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.2
30.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
66.4
0.37
0.9
57.7
38.2
Minor 5ss
43.2
-0.8
2.9
55.3
48.9
Minor BPS
52.6
0.08
2
73.43
38.3

Associated Gene:

Gene:
TNRC6A
Ensembl Gene ID:
ENSAPLG00000009978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029030
594145 - 629519
35375