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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_604431_604603_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
604431 - 604603
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTGTCACTAACC
Flanking Amino Acid:
GMQNLNSVRQNGNPSMFGVG
Intron Amino Acid Position:
1274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
80.2
0.68
0.8
72.8
37.5
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
61.1
0.33
2
76.65
39

Associated Gene:

Gene:
TNRC6A
Ensembl Gene ID:
ENSAPLG00000009978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010410
594145 - 629519
35375