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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_604431_605097_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
604431 - 605097
Intron Length:
667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTGTCACTAACC
Flanking Amino Acid:
SMDRGPYFDKNGNPSMFGVG
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1.1
73.9
42.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
80.2
0.68
0.8
72.8
37.5
Minor 5ss
31.5
-2.1
2.4
34.7
41
Minor BPS
61.1
0.33
2
76.65
39

Associated Gene:

Gene:
TNRC6A
Ensembl Gene ID:
ENSAPLG00000009978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029030
594145 - 629519
35375