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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6061849_6079260_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6061849 - 6079260
Intron Length:
17412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAC
U12 Branch Point Sequence:
AGCAAAGTAACC
Flanking Amino Acid:
PGDDFFIITEGTASVLQRRS
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
57.9
0.2
1.1
59.4
34.8
Major PPT
80.1
0.68
0.8
72.1
37.9
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
40
-0.7
2.2
48.75
40.4

Associated Gene:

Gene:
PRKAR1B
Ensembl Gene ID:
ENSAPLG00000007819
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008186
5982657 - 6080064
97408