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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_606625_607588_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
606625 - 607588
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATTATTAAAT
Flanking Amino Acid:
IKQFTNLSFSRESPEETIQS
Intron Amino Acid Position:
1160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.8
0.78
0.8
82.6
33.7
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
65.7
0.57
1.7
83.39
36.8

Associated Gene:

Gene:
TNRC6A
Ensembl Gene ID:
ENSAPLG00000009978
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010410
594145 - 629519
35375
ENSAPLT00000029030
594145 - 629519
35375