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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6087914_6089287_F

Intron Information:

Intron Rank:
127317
Intron Class:
major
Intron Phase:
Intron Coordinates:
6087914 - 6089287
Intron Length:
1374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTAATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TAACTTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
76
34.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.4
0.68
0.9
74.2
34
Minor 5ss
33.3
-1.9
3.2
44.6
43.4
Minor BPS
50.8
0.1
1.6
67.86
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018649
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023594
6087869 - 6090626
2758