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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6105201_6106370_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6105201 - 6106370
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
GTGTCTTTGAAG
Flanking Amino Acid:
FGYLSFTFCEEAEIPQELIE
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.4
38.7
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
71.6
0.49
1.1
71.7
38.4
Minor 5ss
25.2
-2.9
3.2
30
43.6
Minor BPS
58
0.11
1.5
60.07
42

Associated Gene:

Gene:
PDGFA
Ensembl Gene ID:
ENSAPLG00000007507
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031690
6105138 - 6126217
21080
ENSAPLT00000045147
6105138 - 6125793
20656
ENSAPLT00000031598
6105138 - 6137037
31900
ENSAPLT00000044792
6105138 - 6137514
32377
ENSAPLT00000023515
6105138 - 6122819
17682
ENSAPLT00000038855
6105138 - 6124320
19183
ENSAPLT00000007807
6105138 - 6126358
21221
ENSAPLT00000036964
6105138 - 6126444
21307