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Intron Name: Anas_platyrhynchos_platyrhynchos_15_6113994_6116173_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6113994 - 6116173

Intron Length:

2180

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

CTTCTGTTCGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

TTCACCTGGAAG

Flanking Amino Acid:

PVPIRRKRSIEEAIPAVCKT

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

76.9

31.6

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

80.9

0.7

0.8

75.8

32.6

Minor 5ss

33.9

-1.8

2.9

40.8

39.5

Minor BPS

49.1

-0.2

1.8

57.49

43.7

Associated Gene:

Gene:

PDGFA

Ensembl Gene ID:

ENSAPLG00000007507

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023515

6105138 - 6122819

17682

ENSAPLT00000038855

6105138 - 6124320

19183

ENSAPLT00000007807

6105138 - 6126358

21221

ENSAPLT00000036964

6105138 - 6126444

21307

ENSAPLT00000031690

6105138 - 6126217

21080

ENSAPLT00000045147

6105138 - 6125793

20656

ENSAPLT00000031598

6105138 - 6137037

31900

ENSAPLT00000044792

6105138 - 6137514

32377