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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_6116362_6122711_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6116362 - 6122711
Intron Length:
6350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAA
U12 Branch Point Sequence:
CTTCCTTCAACC
Flanking Amino Acid:
PSRIHHRSVKTFLLRMPVLW
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
65.8
0.39
1.1
69.2
36.3
Major PPT
75.9
0.58
0.8
65.8
36
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
63.6
0.4
1.6
72.01
39.2

Associated Gene:

Gene:
PDGFA
Ensembl Gene ID:
ENSAPLG00000007507
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023515
6105138 - 6122819
17682